CCMI - Presentation

UCSF – Ensembl Tutorial 2019

January

22

8:30 AM-5:00 PM

Registration will open in December 2018.

Hosted by Dr. Erin Haskell, Ensembl Outreach Officer from the EMBL-EBI.

This full-day workshop will provide an introduction to Ensembl (www.ensembl.org), a freely available comprehensive and integrated genomic resource. Ensembl currently has over 100 vertebrate species available, including human genomes, whether in its latest assembly (GRCh38) or the previous ones (GRCh37 and NCBI36). Our sister project, Ensembl Genomes, contains an additional 40,000 bacterial, plant, fungal, protist and metazoan genomes.

Ensembl annotates genes and transcripts based on biological evidence, generates gene trees (both protein coding and non-coding) and whole genome alignments. To annotate other genomic features such as SNPs, CNVs and regulatory elements, Ensembl draws on major biological projects including 1000 Genomes, ENCODE, Roadmap Epigenomics and Blueprint epigenome. We also integrate data from many reference databases such as dbSNP, the NHGRI-EBI GWAS catalogue and OMIM. These data can be accessed through our web browser, APIs (Perl and REST), MySQL and FTP dumps, and our toolkit (e.g., our popular VEP, BioMart, BLAST/BLAT).

The only prerequisite for this workshop is general knowledge of molecular biology and genomics, and a laptop with a web browser. 

No Show Policy

While we do not charge a fee to attend this event, these programs would not be sustainable and available to all wanting to attend, unless all registrants abide by the 48 hour cancellation notice policy. A no-show will also limit your ability to book our events in the future. Thank you in advance for your cooperation.

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